[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 249 items for (author: chin & ja)

EMDB-41637:
Asymmetric cryoEM reconstruction of Mayaro virus
Method: single particle / : Chmielewski D, Kaelber J, Jin J, Weaver S, Auguste AJ, Chiu W

EMDB-28979:
Cryo-EM structure of Chikungunya virus asymmetric unit
Method: single particle / : Su GC, Chmielewsk D, Kaelber J, Pintilie G, Chen M, Jin J, Auguste A, Chiu W

EMDB-41096:
Cryo-electron tomography of Chikungunya virus pentamer structure
Method: subtomogram averaging / : Chmielewsk D, Su GC, Kaelber J, Pintilie G, Chen M, Jin J, Auguste A, Chiu W

EMDB-41631:
Cryo-EM structure of Chikungunya virus with asymmetric reconstruction
Method: single particle / : Su GC, Chmielewsk D, Kaelber J, Pintilie G, Chen M, Jin J, Auguste A, Chiu W

PDB-8fcg:
Cryo-EM structure of Chikungunya virus asymmetric unit
Method: single particle / : Su GC, Chmielewsk D, Kaelber J, Pintilie G, Chen M, Jin J, Auguste A, Chiu W

EMDB-17793:
Cryo-EM structure of cell-free synthesized human histamine H2 receptor coupled to heterotrimeric Gs protein in lipid environment
Method: single particle / : Schnelle K, Koeck Z, Persechino M, Umbach S, Schihada H, Januliene D, Parey K, Pockes S, Kolb P, Doetsch V, Moeller A, Hilger D, Bernhard F

PDB-8pok:
Cryo-EM structure of cell-free synthesized human histamine H2 receptor coupled to heterotrimeric Gs protein in lipid environment
Method: single particle / : Schnelle K, Koeck Z, Persechino M, Umbach S, Schihada H, Januliene D, Parey K, Pockes S, Kolb P, Doetsch V, Moeller A, Hilger D, Bernhard F

EMDB-19250:
Pseudoatomic model of a second-order Sierpinski triangle formed by the citrate synthase from Synechococcus elongatus
Method: single particle / : Lo YK, Bohn S, Sendker FL, Schuller JM, Hochberg G

EMDB-19251:
Structure of a first order Sierpinski triangle formed by the H369R mutant of the citrate synthase from Synechococcus elongatus
Method: single particle / : Lo YK, Bohn S, Sendker FL, Schuller JM, Hochberg G

PDB-8rjk:
Pseudoatomic model of a second-order Sierpinski triangle formed by the citrate synthase from Synechococcus elongatus
Method: single particle / : Lo YK, Bohn S, Sendker FL, Schuller JM, Hochberg G

PDB-8rjl:
Structure of a first order Sierpinski triangle formed by the H369R mutant of the citrate synthase from Synechococcus elongatus
Method: single particle / : Lo YK, Bohn S, Sendker FL, Schuller JM, Hochberg G

EMDB-19067:
Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
Method: single particle / : Helena-Bueno K, Rybak MY, Gagnon MG, Hill CH, Melnikov SV

EMDB-19076:
Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
Method: single particle / : Helena-Bueno K, Rybak MY, Gagnon MG, Hill CH, Melnikov SV

EMDB-19077:
Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).
Method: single particle / : Helena-Bueno K, Rybak MY, Gagnon MG, Hill CH, Melnikov SV

PDB-8rd8:
Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
Method: single particle / : Helena-Bueno K, Rybak MY, Gagnon MG, Hill CH, Melnikov SV

PDB-8rdv:
Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
Method: single particle / : Helena-Bueno K, Rybak MY, Gagnon MG, Hill CH, Melnikov SV

PDB-8rdw:
Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).
Method: single particle / : Helena-Bueno K, Rybak MY, Gagnon MG, Hill CH, Melnikov SV

EMDB-43074:
Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)
Method: single particle / : Rybak MY, Helena-Bueno K, Hill CH, Melnikov SV, Gagnon MG

EMDB-43075:
Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)
Method: single particle / : Rybak MY, Helena-Bueno K, Hill CH, Melnikov SV, Gagnon MG

EMDB-43076:
Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)
Method: single particle / : Rybak MY, Helena-Bueno K, Hill CH, Melnikov SV, Gagnon MG

EMDB-43077:
Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Structure 6)
Method: single particle / : Rybak MY, Helena-Bueno K, Hill CH, Melnikov SV, Gagnon MG

EMDB-43078:
Hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) bound to Mycobacterium smegmatis 70S ribosome, from focused 3D classification and refinement (Structure 6)
Method: single particle / : Rybak MY, Helena-Bueno K, Hill CH, Melnikov SV, Gagnon MG

PDB-8v9j:
Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)
Method: single particle / : Rybak MY, Helena-Bueno K, Hill CH, Melnikov SV, Gagnon MG

PDB-8v9k:
Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)
Method: single particle / : Rybak MY, Helena-Bueno K, Hill CH, Melnikov SV, Gagnon MG

PDB-8v9l:
Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)
Method: single particle / : Rybak MY, Helena-Bueno K, Hill CH, Melnikov SV, Gagnon MG

EMDB-18245:
Plunge-frozen (control) map of beta-galactosidase
Method: single particle / : Esser TK, Boehning J, Bharat TAM, Rauschenbach S

EMDB-37631:
Hepatitis B virus capsid (HBV core protein)
Method: single particle / : Yip RPH, Lai LTF, Lau WCY, Ngo JCK, Kwok DCY

EMDB-37634:
SR protein kinase 2 bound at 2-fold vertex of Hepatitis B virus capsid
Method: single particle / : Yip RPH, Lai LTF, Kwok DCY, Lau WCY, Ngo JCK

EMDB-38062:
Hepatitis B virus capsid in complex with SR protein kinase 2
Method: single particle / : Yip RPH, Lai LTF, Kwok DCY, Lau WCY, Ngo JCK

EMDB-41374:
Antibody N3-1 bound to RBDs in the up and down conformations
Method: single particle / : Hsieh CL, McLellan JS

EMDB-41382:
Antibody N3-1 bound to RBD in the up conformation
Method: single particle / : Hsieh CL, McLellan JS

EMDB-41399:
Antibody N3-1 bound to SARS-CoV-2 spike
Method: single particle / : Hsieh CL, McLellan JS

PDB-8tm1:
Antibody N3-1 bound to RBDs in the up and down conformations
Method: single particle / : Hsieh CL, McLellan JS

PDB-8tma:
Antibody N3-1 bound to RBD in the up conformation
Method: single particle / : Hsieh CL, McLellan JS

EMDB-18244:
ESIBD structure of beta-galactosidase
Method: single particle / : Esser T, Boehning J, Bharat TAM, Rauschenbach S

PDB-8q7y:
ESIBD structure of beta-galactosidase
Method: single particle / : Esser T, Boehning J, Bharat TAM, Rauschenbach S

EMDB-42481:
I53_dn5 nanoparticle displaying the trimeric HA heads with heptad domain, TH-1heptad-I53_dn5
Method: single particle / : Park YJ, Veesler D

EMDB-42482:
I53_dn5 nanoparticle displaying the trimeric HA heads with heptad domain, TH-1heptad-I53_dn5 (local refinement of TH-1heptad)
Method: single particle / : Park YJ, Veesler D

EMDB-42483:
I53_dn5 nanoparticle displaying the trimeric HA heads with heptad domain, TH-2heptad-I53_dn5
Method: single particle / : Park YJ, Veesler D

EMDB-42485:
I53_dn5 nanoparticle displaying the trimeric HA heads with heptad domain, TH-6heptad-I53_dn5
Method: single particle / : Park YJ, Veesler D

EMDB-42486:
I53_dn5 nanoparticle displaying the trimeric HA heads with heptad domain, TH-6heptad-I53_dn5 (local refinement of TH-6heptad)
Method: single particle / : Park YJ, Veesler D

EMDB-16512:
MiniCoV-ADDomer, a SARS-CoV-2 epitope presenting viral like particle
Method: single particle / : Bufton JC, Capin J, Boruku U, Garzoni F, Schaffitzel C, Berger I

EMDB-16522:
Structure of ADDoCoV-ADAH11
Method: single particle / : Yadav KNS, Buzas D, Berger-Schaffitzel C, Berger I

PDB-8c9n:
MiniCoV-ADDomer, a SARS-CoV-2 epitope presenting viral like particle
Method: single particle / : Bufton JC, Capin J, Boruku U, Garzoni F, Schaffitzel C, Berger I

EMDB-17402:
Uncharacterized Q8U0N8 protein from Pyrococcus furiosus
Method: single particle / : Pacesa M, Correia BE, Levy ED

EMDB-18415:
Cysteine tRNA ligase homodimer
Method: single particle / : Pacesa M, Correia BE, Levy ED

PDB-8p49:
Uncharacterized Q8U0N8 protein from Pyrococcus furiosus
Method: single particle / : Pacesa M, Correia BE, Levy ED

PDB-8qhp:
Cysteine tRNA ligase homodimer
Method: single particle / : Pacesa M, Correia BE, Levy ED

EMDB-17958:
Structure of DPS determined by cryoEM at 100 keV
Method: single particle / : McMullan G, Naydenova K, Mihaylov D, Peet MJ, Wilson H, Yamashita K, Dickerson JL, Chen S, Cannone G, Lee Y, Hutchings KA, Gittins O, Sobhy M, Wells T, El-Gomati MM, Dalby J, Meffert M, Schulze-Briese C, Henderson R, Russo CJ

EMDB-17959:
Structure of bacterial ribosome determined by cryoEM at 100 keV
Method: single particle / : McMullan G, Naydenova K, Mihaylov D, Peet MJ, Wilson H, Yamashita K, Dickerson JL, Chen S, Cannone G, Lee Y, Hutchings KA, Gittins O, Sobhy M, Wells T, El-Gomati MM, Dalby J, Meffert M, Schulze-Briese C, Henderson R, Russo CJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more